Vizit Changelog

2025-03-07

  • HPO: Gene - Gene links

2025-02-27

  • New Corpus: HPO

2025-01-22

  • Split TextScan out of MEDLINE
    • New Subcorpora: MEDLINE_SENTENCE
    • New Subcorpora: AOPKB_SENTENCE
  • Corpora
    • MEDLINE 2025012 Update
    • PDB 20250117 Update
    • AOPKB 2025017 Update
  • Reworked Bibliography
    • Database Entries
      • MeSH (part of relationship extraction procedure)
        • Split MeSH Terms to Substances and rest of the Terms
        • Show Links
      • GeneRIF (part of relationship extraction procedure)
        • Show Links
      • GeneToPubmed (not part of relationship extraction procedure due to many unrelated entries)
        • Show Links
  • New Resource: Experiment Category from OBI (Experimental may be deprecated or merged to LP)
  • Deprecated and Deleted Raw Genes
  • Deprecated and Deleted Biosystems (pathways)
  • Deprecated and Deleted Curated Biosystems (curated pathways)
  • Deprecated and Deleted Curated Genes (GeneRIF). They are now matched and presented in Bibliography
  • Deprecate and Deleted Microbiome --> Merged to Organisms
  • UMLS
    • Diseases includes also HPO (phenotypes)
    • Laboratory Procedures expanded with custom in house list
  • MeSH
    • Use MeSH tags as part of the relationship extraction.
    • Deprecated and Deleted Curated MeSH Genes --> Merge to Genes (NCBI, UniProt)
    • Deprecated and Deleted Curated MeSH Physiology Terms --> Merge to Physiology Terms
    • Deprecated and Deleted Curated MeSH Lipids -->Merged to Lipids
    • Deprecated and Deleted MeSH Chemicals --> Merged to Compounds
    • Deprecated (MeSH) Anatomical locations --> Merged to Organs (UBERON)
    • Deprecated MeSH Cell Types --> Merged to Cells (Cell Ontology)
    • Deprecated and Deleted Investigational Drugs. Some of them are now in Drugs

2024-03-15

  • AOPKB update 20240314

2024-03-14

  • New Corpus: PDB

2023-10-30

  • MEDLINE 20231006 update

2023-10-05

  • AOPKB 20231005 update

2023-06-13

  • Expose the bilibliography filter to Vizit
  • New public documentation
  • Two new JS APIs (setFilter() and multiAddAndExpand())

2023-04-24

  • BUGFix: display missing KE references in the Supporting Evidence panel
  • AOPKB: 20230424 update
  • AOPKB: Use the same headings for AOP, KE and KER

2022-11-29

  • BUGFix: AOPKB: Merged entities are now actually merged
  • AOPKB: Supporting Evidence for AOP includes KER and vice versa

2022-11-15

  • DB: 20220718 update
  • New EntityType: ORGAN (from UBERON-Ontology)
  • New EntityType: CELL (from CL-Ontology)
  • Implement Entity aliasing so entities from new corpora can show MEDLINE connections
  • Import NDRKB as a new Vizit Corpus https://neuroderisk.biovista.com/
  • Import AOPKB as a new Vizit Corpus https://aopkb.biovista.com/
  • Enable Directionality support in graphs (arrows and other icons)
  • Enable Corpora with Jaccard strength
  • Display Multiple Types of Supporting Evidence

2020-12-21

  • DB: 20211127 update

2020-05-22

  • DB: 20200430 update
  • BUGFix: tours are working again
  • New API: Add and Connect
  • Tours are working now in full screen

2019-07-29

  • DB: 20190712 update

2019-07-04

  • Introduce Link highlighting with zoom compensation.

2019-07-03

  • Introduce High Throughput Layout.

2019-07-02

  • Introduce bibliography hint on hover.

2019-06-24

  • Introduce copy/paste. Currently it does not work in Safari.

2019-06-13

  • DB: 20190529 update
  • BUGFix: avoid early crash in bibliography pane if entity specified in URL does not exist.

2019-03-07

  • DB: 20190219 update

2019-01-22

  • DB: 20190108 update

2018-11-01

  • DB: 20181018 update

2018-10-01

  • DB: 20180911 update

2018-08-03

  • Show the full name if the entity is manually added
  • BUGFix: layout bug in save drawer: Safari only

2018-06-22

  • DB: 20180608 update

2018-05-02

  • DB: 20180420 update

2018-03-26

  • DB: 20180309 update
  • BUGFix: some icons didn't scale
  • BUGFix: click on node text does not semi-select the entity

2018-03-07

  • DB: 20180212 update
  • BUGFix: weird selection bug

2018-03-02

  • Backend library update
  • BUGFix: Tours pointing to icons was wrong

2018-02-07

  • Mendeley bookmarklet support. Plugin still does not reload

2018-01-26

  • DB: 20180110 update
  • BUGFix: IE11 big graphs are now loading in vizit-research
  • fix scrolling in bibliography panel

2018-01-17

  • BUGFix: Hang in new tab references

2018-01-16

  • Coins citation metadata support. Works with Zotero. Mendeley support is in development.

2018-01-08

  • New Bibliography Panel
    • displays the paper abstract inline
    • shows the matching entities and their synonyms
    • shows the full bilibliography instead of only the first 30 most recent papers
  • Biomarkers color change (to Blue) to better differentiate them from Drugs
  • DB: 20171201 update

2017-10-25

  • Sina Weibo support: Users can now post a graph directly to Sina Weibo.
  • Save as PNG/SVG. Added the capability to Export a graph as image (PNG or SVG). This has been a much requested feature in order to insert a graph image in a presentation or a manuscript.
  • BUGFix: Chrome mouse click input handling

2017-06-27

  • New Category: Biomarkers

2017-05-08

  • New Category: Diagnostic Procedures
  • New Category: Organisms